Reference details

AuthorYearJournalPagesVolumeTitleWeblink
Vos et al.2010J.Med.Genet169-17547(3)Genotype-phenotype correlations in L1 syndrome: a guide for genetic counselling and mutation analysis 19846429

Mutations mentioned in reference

Protein DomainExon/IntronDNA ChangeProtein ChangeTypeReported ClassificationDetailsLOVD ID
Sign.pept.Exon 1c.2T>Cp.Met1?Effect unknownDisease-causing Details
Sign.pept.Exon 1c.39C>Ap.=SilentLikely non disease-causing Details
n.a.Intron 1c.76+1G>Ap.?Splice siteDisease-causing Details
n.a.Intron 1c.76+5G>Ap.?Intronic variationLikely disease-causing Details
NoneExon 2c.78T>Ap.Tyr26XNonsenseDisease-causing Details
n.a.Intron 2c.92-2A>Gp.?Splice siteDisease-causing Details
Ig 1Exon 3c.110T>Ap.Ile37AsnMissenseDisease-causing Details
Ig 1Exon 3c.113C>Tp.Thr38MetMissenseLikely non disease-causing Details
n.a.Intron 3c.198-2A>Tp.?Splice siteDisease-causing Details
Ig 1Exon 4c.325C>Tp.Gln109XNonsenseDisease-causing Details
Ig 1Exon 4c.397G>Tp.Glu133XNonsenseDisease-causing Details
n.a.Intron 4c.400+5G>Cp.Phe108CysfsX92RNA splicing defectDisease-causing Details
Ig 2Exon 5c.414G>Ap.Trp138XNonsenseDisease-causing Details
Ig 2Exon 5c.516G>Ap.Met172IleMissenseLikely disease-causing Details
n.a.Intron 5c.[523+9_523+10delinsGA;523+12delC]p.?Intronic variationLikely disease-causing Details
Ig 2Exon 6c.536T>Gp.Ile179SerMissenseDisease-causing Details
Ig 2Exon 6c.550C>Gp.Arg184GlyMissenseDisease-causing Details
Ig 2Exon 6c.551G>Ap.Arg184GlnMissenseDisease-causing Details
Ig 2Exon 6c.559_594del36p.Met187_Val198delDeletionDisease-causing Details
Ig 2Exon 6c.588_595del8p.Asn197SerfsX37Deletion; frameshiftDisease-causing Details
Ig 2Exon 6c.645C>Tp.=RNA splicing defectDisease-causing Details
Ig 3Exon 7c.761C>Ap.Ala254AspMissenseDisease-causing Details
Ig 3Exon 7c.778_785del8p.Leu260GlyfsX45Deletion; frameshiftDisease-causing Details
Ig 3Exon 8c.826T>Cp.Trp276ArgMissenseDisease-causing Details
Ig 3Exon 8c.938T>Cp.Leu313ProMissenseDisease-causing Details
n.a.Intron 8c.991+1G>Ap.?Splice siteDisease-causing Details
n.a.Intron 8c.991+2T>Cp.?Splice siteDisease-causing Details
n.a.Intron 8c.992-32C>Tp.?Intronic variationLikely non disease-causing Details
Ig 4Exon 9c.1003T>Cp.Trp335ArgMissenseDisease-causing Details
Ig 4Exon 9c.1097G>Ap.Trp366XNonsenseDisease-causing Details
Ig 4Exon 9c.1107C>Ap.Asn369LysMissenseDisease-causing Details
Ig 4Exon 10c.1267C>Tp.Gln423XNonsenseDisease-causing Details
NoneIntron 10c.1268-1G>Ap.?Splice siteDisease-causing Details
Ig 5Exon 12c.1438G>Ap.Gly480ArgMissenseDisease-causing Details
Ig 6Exon 12c.1546G>Ap.Asp516AsnMissenseLikely disease-causing Details
Ig 6Exon 12c.1546G>Tp.Asp516TyrMissenseLikely disease-causing Details
n.a.Intron 12c.1546+2T>Ap.?Splice siteDisease-causing Details
n.a.Intron 12c.1547-2A>Tp.?Splice siteDisease-causing Details
Ig 6Exon 13c.1574G>Ap.Arg525HisMissenseUnknown Details
Fn 1Exon 15c.1880C>Tp.Thr627MetMissenseLikely disease-causing Details
Fn 1Exon 15c.1933A>Tp.Ile645PheMissenseDisease-causing Details
n.a.Intron 15c.1939+1G>Ap.?Splice siteDisease-causing Details
n.a.Intron 15c.1940-1G>Ap.?Splice siteDisease-causing Details
Ig 1Exon 16c.1977T>Cp.=SilentLikely non disease-causing Details
Fn 1Exon 16c.1986G>Ap.Trp662XNonsenseDisease-causing Details
Fn 2Exon 17c.2140C>Tp.Pro714SerMissenseDisease-causing Details
Fn 2Exon 18c.2215delCp.Arg739GlyfsX112Deletion; frameshiftDisease-causing Details
Fn 2Exon 18c.2254G>Ap.Val752MetMissenseDisease-causing Details
Fn 2Exon 18c.2260T>Ap.Trp754ArgMissenseDisease-causing Details
Fn 2Exon 18c.2278C>Tp.Arg760XNonsenseDisease-causing Details
Fn 2Exon 18c.2344_2364dupp.Val782_Val788dupDuplicationDisease-causing Details
Fn 2exon 18c.2365C>Tp.Gln789XNonsenseDisease-causing Details
Fn 3Exon 19c.2433C>Gp.Tyr811XNonsenseDisease-causing Details
Fn 3Exon 20c.2673C>Ap.Tyr891XNonsenseDisease-causing Details
Fn 3Exon 20c.2701C>Tp.Arg901XNonsenseDisease-causing Details
Fn 4Exon 22c.2885dupGp.Lys963GlnfsX41Duplication; frameshiftDisease-causing Details
Fn 4Exon 22c.2919delCp.Glu974AsnfsX7Deletion; frameshiftDisease-causing Details
Fn 4Exon 22c.2934_2935delCAp.His978GlnfsX25Deletion; frameshiftDisease-causing Details
n.a.Intron 23c.3166+2T>Ap.?Splice siteDisease-causing Details
Fn 5Exon 24c.3191C>Ap.Ser1064XNonsenseDisease-causing Details
Fn 5Exon 24c.3211_3213delAACp.Asn1071delDeletionDisease-causing Details
Fn 5Exon 24c.3239T>Ap.Leu1080GlnMissenseDisease-causing Details
n.a.Intron 25c.3458-34C>TnoneIntronic variationNon disease-causing Details
n.a.Intron 26c.3531-12G>Ap.?RNA splicing defectDisease-causing Details
n.a.Intron 26c.3531-1G>Ap.?Splice siteDisease-causing Details
Cytopl.Exon 28c.3772dupTp.X1257LeufsX96Duplication; frameshiftDisease-causing Details

Patients

Family# Affected relativesDNA changeProtein changeExon/IntronClinical featuresRemarks
1 2 c.778_785del8 p.Leu260GlyfsX45Exon 7 Adducted thumbs, Aphasia, Hydrocephalus, Mental retardation, Spastic paraplegia  
2 1 c.1939+1G>A p.?Intron 15 Hydrocephalus, ?  
3 3 c.198-2A>T p.?Intron 3 Hydrocephalus, ? Index case: > 16 yrs
4 1 c.2140C>T p.Pro714SerExon 17 (Dys)agenesis corpus callosum, Aphasia, Hydrocephalus, Mental retardation, Spastic paraplegia > 14 yrs
5 1 c.2885dupG p.Lys963GlnfsX41Exon 22 (Dys)agenesis corpus callosum, Adducted thumbs, Hydrocephalus > 4 yrs
6 3 c.1267C>T p.Gln423XExon 10 Hydrocephalus Index case died one day after birth.
7 1 c.113C>T p.Thr38MetExon 3 Adducted thumbs, Aphasia, Hydrocephalus, Mental retardation, Spastic paraplegia Translocation chromosome 16
8 1 c.938T>C p.Leu313ProExon 8 (Dys)agenesis corpus callosum, Adducted thumbs, Hydrocephalus Index case > 9 yrs
9 2 c.1438G>A p.Gly480ArgExon 12 Hydrocephalus, ? Two terminated pregnacies (male) because of severe hydrocephalus
10 1 c.559_594del36 p.Met187_Val198delExon 6 Unknown  
11 1 c.39C>A p.=Exon 1 Hydrocephalus Stillbirth
12 10 c.550C>G p.Arg184GlyExon 6 Adducted thumbs, Aphasia, Hydrocephalus, Hypotonia, Mental retardation, Spastic paraplegia Died at the age of 6 yrs
13 3 c.2885dupG p.Lys963GlnfsX41Exon 22 Hydrocephalus, ?  
14 9 c.76+5G>A p.?Intron 1 Hydrocephalus, ? Linkage analysis informative
15 1 c.397G>T p.Glu133XExon 4 Hydrocephalus, ?  
16 2 c.991+1G>A p.?Intron 8 Adducted thumbs, Hydrocephalus, ?  
17 2 c.2934_2935delCA p.His978GlnfsX25Exon 22 Adducted thumbs, Hydrocephalus, ? Index case: stillbirth? Uncle died within a few months after birth
18 7 c.2254G>A p.Val752MetExon 18 (Dys)agenesis corpus callosum, Adducted thumbs, Aphasia, Hydrocephalus, Hypotonia, Mental retardation, Spastic paraplegia Index case: > 20 yrs
19 >1 c.536T>G p.Ile179SerExon 6 Hydrocephalus, Spastic paraplegia  
20 2 c.1986G>A p.Trp662XExon 16 Hydrocephalus, ? Both died soon after birth
21 5 c.1574G>A p.Arg525HisExon 13 Spastic paraplegia  
22 3 c.1546+2T>A p.?Intron 12 Adducted thumbs, Hydrocephalus, Mental retardation, Spastic paraplegia > 8 yrs
23 2 c.2433C>G p.Tyr811XExon 19 Hydrocephalus, ? Index case died at birth. Stillbirth uncle
24 3 c.3211_3213delAAC p.Asn1071delExon 24 Hydrocephalus, ?  
25 1 c.3531-12G>A p.?Intron 26 Adducted thumbs, Mental retardation > 7 yrs
26 2 c.2701C>T p.Arg901XExon 20 Adducted thumbs, Hydrocephalus Uncle died a few months after birth
27 2 c.76+1G>A p.?Intron 1 Adducted thumbs, Hydrocephalus, Hypotonia Deceased soon after birth
28 2 c.76+5G>A p.?Intron 1 Hydrocephalus, ?  
29 3 c.1940-1G>A p.?Intron 15 Hydrocephalus  
30 1 c.78T>A p.Tyr26XExon 2 Adducted thumbs, Hydrocephalus  
31 1 c.992-32C>T p.?Intron 8 Unknown  
32 4 c.2254G>A p.Val752MetExon 18 Hydrocephalus, ? Index case: >20 yrs
33 2 c.3239T>A p.Leu1080GlnExon 24 Adducted thumbs, Hydrocephalus, Mental retardation, Spastic paraplegia Index case: >10 yrs. Pat.2 died at the age of 2 yrs
34 2 c.991+2T>C p.?Intron 8 Hydrocephalus, ?  
35 4 c.761C>A p.Ala254AspExon 7 Hydrocephalus, ? At least two boys died before birth.
36 5 c.588_595del8 p.Asn197SerfsX37Exon 6 Adducted thumbs, Aphasia, Hydrocephalus, Mental retardation Died at the age of 2 yrs
37 1 c.1977T>C p.=Exon 16 Adducted thumbs, Aphasia, Mental retardation, Spastic paraplegia  
38 3 c.2344_2364dup p.Val782_Val788dupExon 18 Adducted thumbs, Mental retardation, Spastic paraplegia Index case: > 30 yrs. Brother died at the age of 5 yrs (severe hydrocephalus)
39 2 c.1097G>A p.Trp366XExon 9 (Dys)agenesis corpus callosum, Hydrocephalus  
40 3 c.1107C>A p.Asn369LysExon 9 (Dys)agenesis corpus callosum, Aphasia, Hydrocephalus, Hypotonia, Mental retardation, Spastic paraplegia Index case: >20 yrs
41 1 c.1003T>C p.Trp335ArgExon 9 Unknown  
42 1 c.414G>A p.Trp138XExon 5 Hydrocephalus, ?  
43 1 c.1546G>A p.Asp516AsnExon 12 Adducted thumbs, Aphasia, Hydrocephalus, Hypotonia, Mental retardation, Spastic paraplegia > 3 yrs.
44 1 c.1933A>T p.Ile645PheExon 15 Unknown  
45 3 c.1547-2A>T p.?Intron 12 Adducted thumbs, Hydrocephalus, ? Index case died at the age of 5 yrs. One brother died at birth.
46 2 c.2278C>T p.Arg760XExon 18 Adducted thumbs, Aphasia, Hydrocephalus, Mental retardation, Spastic paraplegia Died at the age og 6 yrs
47 1 c.3772dupT p.X1257LeufsX96Exon 28 (Dys)agenesis corpus callosum, Mental retardation, Spastic paraplegia  
48 1 c.551G>A p.Arg184GlnExon 6 Hydrocephalus, ?  
49 6 c.[523+9_523+10delinsGA;523+12delC] p.?Intron 5 Hydrocephalus, Mental retardation, Spastic paraplegia  
50 3 c.92-2A>G p.?Intron 2 Hydrocephalus, ?  
51 1 c.325C>T p.Gln109XExon 4 (Dys)agenesis corpus callosum, Adducted thumbs, Hydrocephalus, Mental retardation  
52 1 c.113C>T p.Thr38MetExon 3 Adducted thumbs, Hydrocephalus, ? p.Gln 789X detected
53 1 c.2365C>T p.Gln789Xexon 18 Adducted thumbs, Hydrocephalus, ?  
54 1 c.2215delC p.Arg739GlyfsX112Exon 18 Adducted thumbs, Hydrocephalus, Hypotonia Died before the age of 2 yrs
55 7 c.3191C>A p.Ser1064XExon 24 Adducted thumbs, Hydrocephalus, Hypotonia, Mental retardation, Spastic paraplegia Index case: >15 yrs
56 4 c.2260T>A p.Trp754ArgExon 18 Hydrocephalus, ? Index case: > 15 yrs
57 4 c.110T>A p.Ile37AsnExon 3 Hydrocephalus, ?  
58 1 c.400+5G>C p.Phe108CysfsX92Intron 4 Adducted thumbs, Hydrocephalus  
59 2 c.2919delC p.Glu974AsnfsX7Exon 22 Unknown Index case died at very young age
60 1 c.1546G>T p.Asp516TyrExon 12 Unknown > 15 yrs
61 1 c.2T>C p.Met1?Exon 1 ?  
62 1 c.1880C>T p.Thr627MetExon 15 Hydrocephalus, ?  
63 2 c.3166+2T>A p.?Intron 23 Hydrocephalus Index case died soon after birth
64 2 c.645C>T p.=Exon 6 Adducted thumbs, Hydrocephalus  
65 1 c.3531-1G>A p.?Intron 26 Hydrocephalus, ?  
66 2 c.2254G>A p.Val752MetExon 18 Hydrocephalus, ? Index case: terminated pregnacy (male) because of severe hydrocephalus
67 1 c.1268-1G>A p.?Intron 10 Adducted thumbs, Hydrocephalus, ? Stillbirth
68 1 c.826T>C p.Trp276ArgExon 8 Adducted thumbs, Hydrocephalus  
69 1 c.2673C>A p.Tyr891XExon 20 (Dys)agenesis corpus callosum, Adducted thumbs, Aphasia, Hydrocephalus, Mental retardation, Spastic paraplegia  
70 3 c.516G>A p.Met172IleExon 5 Hydrocephalus, Mental retardation, Spastic paraplegia Variation detected in 2 affected brothers and 1 affected sister. All >10 yrs